r语言安装包成功但是用不了rjags包时候，出现这种情况，是怎么回事？有什么解决办法？

来源：蜘蛛抓取(WebSpider) 时间：2023-12-02 10:46 标签： r语言安装包成功但是用不了
InferCNV是一个由broad研究所开发的，利用单细胞转录组数据分析肿瘤细胞拷贝数变异（CNV）的工具。基本思路是在整个基因组范围内，通过计算肿瘤细胞关于参考的“正常”细胞的相对表达，利用滑窗思想对邻近的基因相对表达，计算拷贝数。先贴一个官方安装说明：官方infercnv安装说明安装infercnv包：if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("infercnv")
library(infercnv)
直接安装出现了报错：根据提示，查询搜索可知，infercnv包的安装依赖于rjags，rjags包依赖于JAGS库文件。根据链接https://sourceforge.net/projects/mcmc-jags下载JAGS 并安装，再在R中安装rjags包：if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rjags")
library(rjags)
调用rjags包还是没有成功：然后我去JAGS安装官网查询了一下，尝试添加一句话（即在R中建立与JAGS库文件的连接）：#下载JAGS后连接JAGS环境
Sys.setenv(JAGS_HOME="C:/Program Files/JAGS/JAGS-4.3.0")
library(rjags)
再次调用rjags和infercnv包就成功啦！注意：每次调用infercnv包时，要先加上这句代码，否则仍然调用失败。参考：https://www.jianshu.com/p/6b44e511f641https://www.jianshu.com/p/a40c5bad4493
dependencies ‘doMC’, ‘rpvm’, ‘Rcompression’, ‘RMySQL’, ‘globaltest’, ‘OpenMx’, ‘pryr’, ‘gpclib’, ‘marray’, ‘affy’, ‘Biobase’, ‘RSVGTipsDevice’, ‘rhdf5’, ‘graph’, ‘ncdf4’, ‘Rgraphviz’ are not availablealso installing the dependencies ‘latticeExtra’, ‘slam’, ‘geoRglm’, ‘vioplot’, ‘ncdf’, ‘rasterVis’, ‘Rglpk’, ‘Rsymphony’, ‘BRugs’, ‘rjags’, ‘optextras’, ‘svGUI’, ‘misc3d’, ‘geoR’, ‘denstrip’, ‘raster’, ‘polyclip’, ‘relations’, ‘igraphdata’, ‘R2WinBUGS’, ‘SuppDists’, ‘numDeriv’, ‘gamm4’, ‘betareg’, ‘maxlike’, ‘R2jags’, ‘R2OpenBUGS’, ‘BB’, ‘ucminf’, ‘Rcgmin’, ‘Rvmmin’, ‘minqa’, ‘setRNG’, ‘dfoptim’, ‘svUnit’, ‘mapdata’, ‘sm’, ‘rpanel’, ‘tkrplot’, ‘RandomFields’, ‘deldir’, ‘clue’, ‘igraph’, ‘emdbook’, ‘MuMIn’, ‘AICcmodavg’, ‘optimx’, ‘gmp’, ‘rgdal’, ‘gstat’, ‘spatstat’, ‘PBSmapping’, ‘flexclust’, ‘isa2’, ‘bbmle’, ‘Rmpfr’, ‘partitions’, ‘polynom’, ‘rugarch’, ‘mvnormtest’, ‘pkgKitten’, ‘combinat’, ‘RItools’, ‘rgenoud’, ‘rbounds’, ‘inline’, ‘forward’, ‘RDCOMClient’, ‘mapproj’, ‘linprog’, ‘scalreg’, ‘sp’, ‘maptools’, ‘biclust’, ‘MplusAutomation’, ‘GPArotation’, ‘mnormt’, ‘copula’, ‘png’, ‘RcppArmadillo’, ‘hexbin’, ‘CompQuadForm’, ‘cem’, ‘optmatch’, ‘Matching’, ‘WhatIf’, ‘BMA’, ‘DescTools’, ‘maps’, ‘gridBase’, ‘hdi’, ‘spam’, ‘shapefiles’, ‘spdep’, ‘rgeos’, ‘seriation’, ‘lavaan.survey’, ‘semPlot’, ‘semTools’, ‘simsem’, ‘Cairo’, ‘markdown’, ‘Amelia’, ‘survey’, ‘MatchIt’, ‘pcaPP’, ‘relimp’, ‘Ecfun’, ‘gdata’, ‘gnm’, ‘ca’, ‘gmodels’, ‘Fahrmeir’, ‘Sleuth2’, ‘stabs’, ‘fields’, ‘BayesX’, ‘gbm’, ‘snowfall’, ‘corrplot’, ‘corpcor’, ‘gsl’, ‘lavaan’, ‘arm’, ‘DBI’, ‘RSQLite’, ‘RODBC’, ‘shiny’, ‘bitops’, ‘AGD’, ‘mitools’, ‘pan’, ‘Zelig’, ‘rrcov’, ‘lokern’, ‘qvcalc’, ‘glmmML’, ‘Ecdat’, ‘geepack’, ‘ordinal’, ‘vcdExtra’, ‘glmnet’, ‘mboost’, ‘lqa’, ‘lpSolve’, ‘GAMBoost’, ‘penalized’, ‘TTR’, ‘gamlss.data’, ‘candisc’, ‘corrgram’, ‘FRB’, ‘animation’, ‘miscTools’, ‘VGAMdata’, ‘polycor’, ‘MBESS’, ‘mi’, ‘quadprog’, ‘biglm’, ‘tripack’, ‘logspline’, ‘nor1mix’, ‘MatrixModels’, ‘Formula’, ‘testit’, ‘rmarkdown’, ‘XML’, ‘RCurl’, ‘rms’, ‘mice’, ‘tables’, ‘robust’, ‘fit.models’, ‘MPV’, ‘sfsmisc’, ‘catdata’, ‘quantmod’, ‘gamlss’, ‘gamlss.dist’, ‘gplots’, ‘fBasics’, ‘poLCA’, ‘heplots’, ‘maxLik’, ‘MCMCpack’, ‘VGAM’, ‘sem’, ‘locfit’, ‘expm’, ‘diptest’, ‘mgcv’, ‘mix’, ‘bdsmatrix’, ‘kinship2’, ‘leaps’, ‘oz’, ‘quantreg’, ‘knitr’, ‘Hmisc’, ‘date’, ‘robustbase’, ‘PerformanceAnalytics’, ‘fTrading’, ‘reshape’, ‘effects’, ‘ineq’, ‘mlogit’, ‘np’, ‘plm’, ‘pscl’, ‘ROCR’, ‘sampleSelection’, ‘systemfit’, ‘rgl’, ‘truncreg’, ‘urca’, ‘TSA’, ‘ape’, ‘flexmix’, ‘gee’, ‘mclust’, ‘rmeta’, ‘coxme’, ‘SimComp’, ‘ISwR’, ‘rlecuyer’, ‘rsprng’, ‘nws’, ‘coda’, ‘chron’, ‘DAAG’, ‘fts’, ‘its’, ‘mondate’, ‘timeDate’, ‘timeSeries’, ‘tis’, ‘tseries’, ‘xts’, ‘lmtest’, ‘AER’, ‘dynlm’, ‘HSAUR’, ‘coin’, ‘multcomp’, ‘snow’, ‘RUnit’, ‘gclus’, ‘SparseM’, ‘xtable’, ‘plotmo’, ‘plotrix’, ‘akima’, ‘mvtnorm’, ‘TH.data’, ‘scatterplot3d’, ‘som’, ‘zoo’, ‘sandwich’, ‘strucchange’, ‘modeltools’, ‘vcd’, ‘Rmpi’, ‘microbenchmark’, ‘logcondens’, ‘doSNOW’, ‘cba’, ‘testthat’, ‘e1071’, ‘earth’, ‘fastICA’, ‘gam’, ‘ipred’, ‘kernlab’, ‘klaR’, ‘ellipse’, ‘mda’, ‘party’, ‘pls’, ‘pROC’, ‘proxy’, ‘randomForest’, ‘RANN’, ‘spls’

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